I have the same question, our JBoss 6 distro came with hibernate-core.jar (plus about 11 other hibernate*jar files), and the Hibernate 3.6.3 distribution comes with hibernate3.jar.
I opened the two jars and did a diff and found quite a number of differences (100's), however replacing hibernate-core.jar with hibernate3.jar and relaunching our JBoss server seems to work, though obviously I am worried that there is something in these diffs that will cause us problems.
Some clarification from the Hibernate folks would be very welcome.
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