I dont know about any organizations for US, but there is an EU organization that is actively trying to stop the changes the EU patent organization wants to do (which would create the same insane situation as in US).
http://www.nosoftwarepatents.com/
Theres a lot of information about the problems with software patents there. Including a much better explanation of the problems with software patents than I could type up, so go check it out.
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I don't see any easy answer to the issues around patents, but to use a statement that software patents must be stopped seems to throw the baby out with the bath water. If you do develop a completely new idea that solves a problem in a unique way, is that investment you made no longer worthy of protection?
We do, its called copyright. Again though, check the link.
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I know almost nothing about patents, but I have the impression that patents used to be about specific implementations of an idea.
Yeah, normally patents arent just to protect your investment, but also to describe exactly how to produce the effect. So a too generic patent wouldnt be allowed because you cannot follow the steps to get a "device that reduces the impact of a person's foot as it hits the ground". I think they even need some form of a prototype as a proof of concept. Thats why they work, as long as someone does a proper checkup of the patent they will be able to tell if its enough to produce an actual object that works, if it doesnt its an invalid patent.
I have no idea as to how they can get around that on software patents, somehow they do, its mostly semantics though I think. Theres also a problem with *who* gets money when a faulty patent gets filed (check the link for more about that - Im fairly certain the problem is identical in US).