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Read this: http://hibernate.org/42.html

I have a java webstart application where I retrieve objects from my webserver via tomcat. Hibernate operates in a servlet to retrieve my database information (JDBC) and then my servlet container sends it back to me in a Https session. My question is, would it be better to have all my hibernate sql statement reside on the webserver in the servlets or should I send over the statement from the application. If I save all the statements on the webserver, then I must uniquely identify each method that will retrieve the correct class. If I send over the sqlhibernate statement, I can build a generic servlet to return just about any list or set of classes.

Which is better?

This is quite a question that only you can answer. The answer determines one of the major architectual decision for this application. Before you decide on how Hibernate is to operate you have to decided on your remoting protocol.