I have two perssitence.xmls that belongs to two databases
-----------------first persietnce.xml------------
tables --A,B,C

--------second persistence.xml-------------------
tables X,Y,Z

I have main application-context in my service layer where I am importing above business layers xml as below:
<bean id="entityManagerFactory" class="org.springframework.orm.jpa.LocalContainerEntityManagerFactoryBean">
<property name="persistenceXmlLocation" value="classpath*:test/merlin-persistence.xml"/>
<!-- <property name="persistenceUnitManager" ref="persistenceUnitManager"/> -->
<property name="persistenceUnitName" value="MerlinPU" />
<property name="dataSource" ref="dataSource"/>
<property name="jpaPropertyMap">
<map>
<entry key="hibernate.format_sql" value="true" />
<entry key="hibernate.hbm2ddl.auto" value="update" />
</map>
</property>
<property name="jpaDialect">
<bean class="org.springframework.orm.jpa.vendor.HibernateJpaDialect"/>
</property>
</bean>

<!-- Define the EntityManagerFactory -->
<bean id="geoentityManagerFactory" class="org.springframework.orm.jpa.LocalContainerEntityManagerFactoryBean">
<!-- <property name="persistenceUnitManager" ref="geopersistenceUnitManager"/> -->
<property name="persistenceXmlLocation" value="classpath*:test1/geolocate-persistence.xml"/>
<property name="persistenceUnitName" value="GeolocatePU" />
<property name="dataSource" ref="geodataSource"/>
<property name="jpaPropertyMap">
<map>
<entry key="hibernate.format_sql" value="false" />
<entry key="hibernate.hbm2ddl.auto" value="update" />
</map>
</property>
<property name="jpaDialect">
<bean class="org.springframework.orm.jpa.vendor.HibernateJpaDialect"/>
</property>
</bean>
but when i start my tomcat server ,
two databses have all the tables A,B,C,X,Y,Z ..how can i generate databses only with respeective tables, am i doing anything wrong

when i tried to run localling using main method in java and tried to call applicationcontext tables are generated perfectly in two databases, but when i tried to run the same in tomcat, the tables are mixed in both databses, am i doing anything wrong or do i have to set anything on tomcat server please suggest